PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA007838-PA
Common NameOsI_06464
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 301aa    MW: 32156.8 Da    PI: 6.3155
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA007838-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.52.1e-33161072102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F+ k+y++++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll
  BGIOSGA007838-PA  16 FVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHLL 99 
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i r++s
  BGIOSGA007838-PA 100 RRIVRRSS 107
                       *****987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.9E-3712105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.52E-3312105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-5212105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-2916105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-171639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-175466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-176779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MTTTTTAEGG GGVAPFVAKT YRMVDDPATD GVIAWGRDSN SFVVADPFAF SQTLLPAHFK  60
HSNFSSFVRQ LNTYGFRKVD PDRWEFAHVS FLRGQTHLLR RIVRRSSGGG GAKRKEEAGG  120
CGGGGEAAAG DVDEESAVVA MEVARLRREQ REIEGRVAAM WRRVQETERR PKQMLAFLVK  180
VVGDPQVLRR LVDRDNTNAA PAASNADDAA VHHQVKRPRL LLDSSSTTTT HGDRHLVTAA  240
ADGFYAGGCG PEAAAAAAFV PDDALDFTGL YTGGDGFGNA VVDAGVDDPP AYAFPVVDSG  300
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-24710520129Heat shock factor protein 1
5d5v_B9e-24710520129Heat shock factor protein 1
5d5v_D9e-24710520129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.112500.0callus| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329916970.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064880.0AK106488.1 Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623571.11e-180PREDICTED: heat stress transcription factor C-2a
SwissprotQ6EUG40.0HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA2X2Q30.0A2X2Q3_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0G3Z20.0A0A0E0G3Z2_ORYNI; Uncharacterized protein
STRINGBGIOSGA007838-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-55heat shock transcription factor C1